PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56814.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 165aa    MW: 18011.2 Da    PI: 5.0807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56814.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-1268110754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  AveY+++L
  MLOC_56814.4  68 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAVEYLQEL 110
                   89*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.48561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1764133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-967110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1467116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1768123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-1268114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MMILDDADDD TISLDASGLN YDSEDGRDVE ESGRKDGKES NVNSTVTGGA AAEGNKGKKK  60
GMPAKNLMAE RRRRKKLNDR LYMLRSVVPR ISKMDRASIL GDAVEYLQEL KQKINDLQNE  120
LDSSPSTSSL PPTPTSFNPL TPTMPALPSR VKEELTSPTA QQPCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15775KKKGMPAKNLMAERRRRKK
26976ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5621841e-175EU562184.1 Triticum aestivum cultivar Norstar ICE87 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678166.12e-68PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE22e-47ICE1_ARATH; Transcription factor ICE1
TrEMBLM0X3X41e-113M0X3X4_HORVD; Uncharacterized protein
TrEMBLM0X3X51e-112M0X3X5_HORVD; Uncharacterized protein
TrEMBLM0X3X71e-117M0X3X7_HORVD; Uncharacterized protein
STRINGMLOC_56814.31e-111(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-31bHLH family protein